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1

`Place-cell' emergence and learning of invariant data with restricted Boltzmann machines: breaking and dynamical restoration of continuous symmetries in the weight space

Harsh, Moshir, Tubiana, JÃ©rÃ´me, Cocco, S, Monasson, Remi

Journal:

Journal of Physics A Mathematical and Theoretical

Year:

2020

File:

PDF, 2.00 MB

2020

2

Theoretical models for single-molecule DNA and RNA experiments: from elasticity to unzipping

Simona Cocco, John F. Marko, Rémi Monasson

Journal:

Comptes Rendus Physique

Year:

2002

File:

PDF, 206 KB

2002

3

Diffusion, localization and dispersion relations on “small-world” lattices

Journal:

The European Physical Journal B / Condensed Matter and Complex Systems

Year:

1999

Language:

english

File:

PDF, 325 KB

english, 1999

4

Restarts and exponential acceleration of the Davis-Putnam-Loveland-Logemann algorithm: A large deviation analysis of the generalized unit clause heuristic for random 3-SAT

Simona Cocco, Rémi Monasson

Journal:

Annals of Mathematics and Artificial Intelligence

Year:

2005

Language:

english

File:

PDF, 298 KB

english, 2005

5

Restarts and Exponential Acceleration of the Davis–Putnam–Loveland–Logemann Algorithm: A Large Deviation Analysis of the Generalized Unit Clause Heuristic for Random 3-SAT

Simona Cocco, Rémi Monasson

Journal:

Annals of Mathematics and Artificial Intelligence

Year:

2005

Language:

english

File:

PDF, 288 KB

english, 2005

6

10.1038/22055

Kirkpatrick, Scott, Monasson, Rémi, Zecchina, Riccardo, Selman, Bart, Troyansky, Lidror

Journal:

Year:

1999

Language:

english

File:

PDF, 222 KB

english, 1999

7

Weight Space Structure and Internal Representations: A Direct Approach to Learning and Generalization in Multilayer Neural Networks

Monasson, Rémi, Zecchina, Riccardo

Journal:

Physical Review Letters

Year:

1996

File:

PDF, 73 KB

1996

8

Weight Space Structure and Internal Representations: A Direct Approach to Learning and Generalization in Multilayer Neural Networks

Monasson, Rémi, Zecchina, Riccardo

Journal:

Physical Review Letters

Year:

1995

Language:

english

File:

PDF, 280 KB

english, 1995

9

Glassy transition in the three-dimensional random-field Ising model

Mézard, M., Monasson, R.

Journal:

Physical Review B

Year:

1994

Language:

english

File:

PDF, 146 KB

english, 1994

10

Neuronal couplings between retinal ganglion cells inferred by efficient inverse statistical physics methods

Cocco, S., Leibler, S., Monasson, R.

Journal:

Proceedings of the National Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 571 KB

english, 2009

11

Inverse Statistical Physics of Protein Sequences: A Key Issues Review

Cocco, S, Feinauer, Christoph, Figliuzzi, Matteo, Monasson, Remi, Weigt, Martin

Journal:

Reports on Progress in Physics

Year:

2017

Language:

english

File:

PDF, 2.89 MB

english, 2017

12

Statistical physics and representations in real and artificial neural networks

Cocco, S., Monasson, R., Posani, L., Rosay, S., Tubiana, J.

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2017

Language:

english

File:

PDF, 10.81 MB

english, 2017

13

Innovation Rather than Improvement: A Solvable High-Dimensional Model Highlights the Limitations of Scalar Fitness

Tikhonov, Mikhail, Monasson, Remi

Journal:

Journal of Statistical Physics

Year:

2018

Language:

english

File:

PDF, 1.38 MB

english, 2018

14

Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable Models

Jacquin, Hugo, Gilson, Amy, Shakhnovich, Eugene, Cocco, Simona, Monasson, Rémi, Marks, Debora S.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.19 MB

english, 2016

15

Capacity-Resolution Trade-Off in the Optimal Learning of Multiple Low-Dimensional Manifolds by Attractor Neural Networks

Battista, Aldo, Monasson, RÃ©mi

Journal:

Physical Review Letters

Year:

2020

Language:

english

File:

PDF, 578 KB

english, 2020

16

2+p-SAT: Relation of typical-case complexity to the nature of the phase transition

Rémi Monasson, Riccardo Zecchina, Scott Kirkpatrick, Bart Selman, Lidror Troyansky

Journal:

Random Structures & Algorithms

Year:

1999

Language:

english

File:

PDF, 405 KB

english, 1999

17

Potential use of geothermal steam in industrial processes. Results of icetec studies

Hallgrímur Mónasson, Gudmundur Gunnarsson, Thor Tómasson

Journal:

Year:

1992

Language:

english

File:

PDF, 407 KB

english, 1992

18

Synthesis and biological evaluation of a diazepanone-based library of liposidomycins analogs as MraY inhibitors

Janez Mravljak, Olivier Monasson, Bayan Al-Dabbagh, Muriel Crouvoisier, Ahmed Bouhss, Christine Gravier-Pelletier, Yves Le Merrer

Journal:

European Journal of Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 725 KB

english, 2011

19

Heuristic average-case analysis of the backtrack resolution of random 3-satisfiability instances

Simona Cocco, Rémi Monasson

Journal:

Theoretical Computer Science

Year:

2004

Language:

english

File:

PDF, 548 KB

english, 2004

20

Synthetic studies towards diazepanone scaffolds

Olivier Monasson, Maryon Ginisty, Janez Mravljak, Gildas Bertho, Christine Gravier-Pelletier, Yves Le Merrer

Journal:

Tetrahedron: Asymmetry

Year:

2009

Language:

english

File:

PDF, 608 KB

english, 2009

21

Efficient synthesis of polyfunctionalised enantiopure diazepanone scaffolds

Olivier Monasson, Maryon Ginisty, Gildas Bertho, Christine Gravier-Pelletier, Yves Le Merrer

Journal:

Tetrahedron Letters

Year:

2007

Language:

english

File:

PDF, 159 KB

english, 2007

22

Editorial

O. Dubois, R. Monasson, B. Selman, R. Zecchina

Journal:

Theoretical Computer Science

Year:

2001

Language:

english

File:

PDF, 31 KB

english, 2001

23

Statistical mechanics methods and phase transitions in optimization problems

Olivier C. Martin, Rémi Monasson, Riccardo Zecchina

Journal:

Theoretical Computer Science

Year:

2001

Language:

english

File:

PDF, 409 KB

english, 2001

24

Entropy of particle packings: An illustration on a toy model

Rémi Monasson, Olivier Pouliquen

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1997

Language:

english

File:

PDF, 1.21 MB

english, 1997

25

Adaptive cluster algorithm to infer Boltzmann machines from multi-electrode recording data

Simona Cocco, Rémi Monasson

Journal:

BMC Neuroscience

Year:

2011

Language:

english

File:

PDF, 143 KB

english, 2011

26

Inferring interactions in assemblies of stochastic integrate-and-fire neurons from spike recordings: method, applications and software

Carlo Barbieri, Simona Cocco, Rémi Monasson

Journal:

BMC Neuroscience

Year:

2011

Language:

english

File:

PDF, 140 KB

english, 2011

27

Statistical physics analysis of the computational complexity of solving random satisfiability problems using backtrack algorithms

S. Cocco, R. Monasson

Journal:

The European Physical Journal B / Condensed Matter and Complex Systems

Year:

2001

Language:

english

File:

PDF, 528 KB

english, 2001

28

Fast inference of interactions in assemblies of stochastic integrate-and-fire neurons from spike recordings

Remi Monasson, Simona Cocco

Journal:

Journal of Computational Neuroscience

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

29

On Large Deviation Properties of Erdös–Rényi Random Graphs

Andreas Engel, Rémi Monasson, Alexander K. Hartmann

Journal:

Journal of Statistical Physics

Year:

2004

Language:

english

File:

PDF, 407 KB

english, 2004

30

Phase transitions and complexity in computer science: an overview of the statistical physics approach to the random satisfiability problem

Giulio Biroli, Simona Cocco, Rémi Monasson

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2002

Language:

english

File:

PDF, 189 KB

english, 2002

31

Criticality and universality in the unit-propagation search rule

C. Deroulers, R. Monasson

Journal:

The European Physical Journal B / Condensed Matter and Complex Systems

Year:

2006

Language:

english

File:

PDF, 861 KB

english, 2006

32

Slow nucleic acid unzipping kinetics from sequence-defined barriers

S. Cocco, J.F. Marko, R. Monasson

Journal:

The European Physical Journal E

Year:

2003

Language:

english

File:

PDF, 611 KB

english, 2003

33

Force-extension behavior of folding polymers

S. Cocco, J.F. Marko, R. Monasson, A. Sarkar, J. Yan

Journal:

The European Physical Journal E

Year:

2003

Language:

english

File:

PDF, 327 KB

english, 2003

34

Structural Glass Transition and the Entropy of the Metastable States

Monasson, Rémi

Journal:

Physical Review Letters

Year:

1995

Language:

english

File:

PDF, 286 KB

english, 1995

35

Adaptive Cluster Expansion for the Inverse Ising Problem: Convergence, Algorithm and Tests

S. Cocco, R. Monasson

Journal:

Journal of Statistical Physics

Year:

2012

Language:

english

File:

PDF, 2.45 MB

english, 2012

36

Straightforward glycosylation of alcohols and amino acids mediated by ionic liquid

Olivier Monasson, Gwenaëlle Sizun-Thomé, Nadège Lubin-Germain, Jacques Uziel, Jacques Augé

Journal:

Carbohydrate Research

Year:

2012

Language:

english

File:

PDF, 841 KB

english, 2012

37

Fast inference of couplings between integrate-and-fire neurons from their spiking activity

Simona Cocco, Stanislas Leibler, Rémi Monasson

Journal:

BMC Neuroscience

Year:

2009

Language:

english

File:

PDF, 180 KB

english, 2009

38

Neuronal couplings inferred by an efficient inverse Ising method

Simona Cocco, Stanislas Leibler, Rémi Monasson

Journal:

BMC Neuroscience

Year:

2009

Language:

english

File:

PDF, 173 KB

english, 2009

39

A variational description of the ground state structure in random satisfiability problems

G. Biroli, R. Monasson, M. Weigt

Journal:

The European Physical Journal B / Condensed Matter and Complex Systems

Year:

2000

Language:

english

File:

PDF, 340 KB

english, 2000

40

Lorenzo Saitta, Attilio Giordana, Antoine Cornuéjols: Phase Transitions in Machine Learning

Journal:

Journal of Statistical Physics

Year:

2012

Language:

english

File:

PDF, 130 KB

english, 2012

41

Crosstalk and transitions between multiple spatial maps in an attractor neural network model of the hippocampus: Phase diagram

Monasson, R., Rosay, S.

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 2.30 MB

english, 2013

42

Continuous or dicrete? Attractor dynamics and spatial representations in a model of the hippocampal network

Federico Stella, Remi Monasson, Alessandro Treves

Journal:

BMC Neuroscience

Year:

2013

Language:

english

File:

PDF, 70 KB

english, 2013

43

Cross-talk and transitions between multiple environments in an attractor neural network model of the hippocampus

Sophie Rosay, Rémi Monasson

Journal:

BMC Neuroscience

Year:

2013

Language:

english

File:

PDF, 144 KB

english, 2013

44

An algorithm for counting circuits: Application to real-world and random graphs

Marinari, E, Monasson, R, Semerjian, G

Journal:

EPL (Europhysics Letters)

Year:

2006

Language:

english

File:

PDF, 142 KB

english, 2006

45

A single defect approximation for localized states on random lattices

Biroli, G, Monasson, R

Journal:

Journal of Physics A: Mathematical and General Physics

Year:

1999

Language:

english

File:

PDF, 147 KB

english, 1999

46

Force and kinetic barriers to unzipping of the DNA double helix

Cocco, S., Monasson, R., Marko, J. F.

Journal:

Proceedings of the National Academy of Sciences

Year:

2001

Language:

english

File:

PDF, 130 KB

english, 2001

47

Reconstruction and Identification of DNA Sequence Landscapes from Unzipping Experiments at Equilibrium

Barbieri, Carlo, Cocco, Simona, Jorg, Thomas, Monasson, Rémi

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 1008 KB

english, 2014

48

Stochastic Ratchet Mechanisms for Replacement of Proteins Bound to DNA

Cocco, S., Marko, J. F., Monasson, R.

Journal:

Physical Review Letters

Year:

2014

Language:

english

File:

PDF, 287 KB

english, 2014

49

Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses

Greenbaum, Benjamin D., Cocco, Simona, Levine, Arnold J., Monasson, Rémi

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 824 KB

english, 2014

50

Small-correlation expansions for the inverse Ising problem

Sessak, Vitor, Monasson, Rémi

Journal:

Journal of Physics A Mathematical and Theoretical

Year:

2009

Language:

english

File:

PDF, 299 KB

english, 2009